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Medals | | Club | I | II | III | Competitors |
| 1. | KYODAI | 9 | 9 | 13 | 49 |
| 2. | Audentese Spordiklubi | 7 | 7 | 9 | 50 |
| 3. | Spordiklubi Barra | 6 | 4 | 4 | 45 |
| 4. | Tartu Do | 5 | 5 | 9 | 83 |
| 5. | JUDO CLUB MEDVED | 4 | 0 | 0 | 7 |
| 6. | Spordiklubi Altia | 3 | 1 | 0 | 10 |
| 7. | R. Sarguno sporto gimnazija | 2 | 3 | 1 | 12 |
| 8. | Judo club SENSEI | 2 | 2 | 2 | 16 |
| 9. | Samurs | 2 | 1 | 3 | 13 |
| 10. | Chikara | 2 | 0 | 2 | 8 |
| 11. | Magas | 2 | 0 | 0 | 4 |
| 12. | Dokyo | 1 | 4 | 0 | 15 |
| 13. | Aitado | 1 | 2 | 5 | 48 |
| 14. | Kibuvits Judo | 1 | 1 | 3 | 9 |
| 15. | challenge | 1 | 1 | 2 | 8 |
| 15. | Võru Judoklubi REI | 1 | 1 | 2 | 14 |
| 17. | MAKKABI LATVIA | 1 | 1 | 1 | 5 |
| 18. | FUDOSHIN | 1 | 1 | 0 | 3 |
| 18. | Judo club SALDUS | 1 | 1 | 0 | 4 |
| 20. | Budolinn | 1 | 0 | 3 | 22 |
| 21. | Mikado | 1 | 0 | 1 | 4 |
| 21. | Viljandi Spordikool | 1 | 0 | 1 | 5 |
| 23. | Do | 1 | 0 | 0 | 2 |
| 23. | Jikan | 1 | 0 | 0 | 1 |
| 23. | Kohtla-Jarve Kalev | 1 | 0 | 0 | 4 |
| 26. | Energia/Buffen-Do | 0 | 4 | 0 | 14 |
| 27. | Spordiklubi Ookami | 0 | 1 | 3 | 6 |
| 28. | Dodze | 0 | 1 | 2 | 14 |
| 29. | Saaremaa Spordikool | 0 | 1 | 1 | 10 |
| 30. | Ippon judo club | 0 | 1 | 0 | 1 |
| 31. | Ipon | 0 | 0 | 1 | 5 |
| 31. | Rapla Judoklubi | 0 | 0 | 1 | 4 |
| 31. | Tartu Valla Spordiklubi | 0 | 0 | 1 | 1 |
| 34. | Buffen-Do | 0 | 0 | 0 | 1 |
| 34. | JIKAN | 0 | 0 | 0 | 8 |
| 34. | Meido-kan | 0 | 0 | 0 | 2 |
| 34. | Samurai | 0 | 0 | 0 | 1 |
| 34. | sk zen | 0 | 0 | 0 | 4 |
| 34. | Spordiklubi Sakura | 0 | 0 | 0 | 4 |
| 34. | Team Finland | 0 | 0 | 0 | 18 |
| 34. | Toni Judokool EST | 0 | 0 | 0 | 1 |
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